PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676734018
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family HSF
Protein Properties Length: 350aa    MW: 39731.7 Da    PI: 4.9287
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676734018genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind115.24e-36461372102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+ye++ed+++++++sws+  nsf+v+d+++f++++Lp+yFkhsnf+SF+RQLn+YgF+k++ ++         weF+++ F +g+k+ll++ik
     676734018  46 FLTKTYEMVEDPATDTVVSWSNGRNSFIVWDSHKFSTTLLPRYFKHSNFSSFIRQLNTYGFRKIDPDR---------WEFANEGFLAGQKHLLKSIK 133
                   9****************************************************************999.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+++
     676734018 134 RRRN 137
                   *986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.9E-3842135IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467853.13E-3542135IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.3E-5942135IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.0E-3146135IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.9E-194669IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.9E-198496IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434085109IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.9E-1997109IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009644Biological Processresponse to high light intensity
GO:0010200Biological Processresponse to chitin
GO:0010286Biological Processheat acclimation
GO:0034605Biological Processcellular response to heat
GO:0034620Biological Processcellular response to unfolded protein
GO:0042542Biological Processresponse to hydrogen peroxide
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071456Biological Processcellular response to hypoxia
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MEQMKVEFEE ETVTYGGSTA AASSSVGSSS SPRPMEGLNE TGPPPFLTKT YEMVEDPATD  60
TVVSWSNGRN SFIVWDSHKF STTLLPRYFK HSNFSSFIRQ LNTYGFRKID PDRWEFANEG  120
FLAGQKHLLK SIKRRRNMGL QNLSQQGSGS GSGMSCVEVG HYGFEGEVER LKRDHSVLVA  180
EVVRLRQQQH SSKSQVAEME QRLLVTEKRQ QQMMTFLAKA LNNPNFVQQF ALISKEKKSL  240
FGLDIGRKRR LTSSPSLGTM EERMLHDQEF DRMKEDMETL LAEAIDNESS NLMPSKEEQC  300
LEAMNVMMED GHLEAEMDVK VEDFVTSPLD WGNEDLHDIV DQMGFLGSEP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B4e-253713517129Heat shock factor protein 1
5d5v_B4e-253713517129Heat shock factor protein 1
5d5v_D4e-253713517129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1128134LKSIKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ4352400.0HQ435240.1 Brassica napus cultivar Deyou No.5 heat shock transcription factor A2 (HsfA2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006408858.10.0hypothetical protein EUTSA_v10002333mg
SwissprotO809820.0HSFA2_ARATH; Heat stress transcription factor A-2
TrEMBLV4NU900.0V4NU90_EUTSA; Uncharacterized protein
STRINGfgenesh2_kg.4__531__AT2G26150.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM116722732
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.10.0heat shock transcription factor A2